[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 84 items for (author: zhou & xe)

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40983:
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Method: single particle / : Zhou XE, Zhang Y, Zhou Y, He Q, Cao X, Kariapper L, Suino-Powell K, Zhu Y, Zhang F, Karsten M

EMDB-28907:
Gi bound mu-opioid receptor in complex with beta-endorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28908:
Gi bound mu-opioid receptor in complex with endomorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28909:
Gi bound delta-opioid receptor in complex with deltorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28911:
Gi bound kappa-opioid receptor in complex with dynorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28912:
Gi bound nociceptin receptor in complex with nociceptin peptide
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28066:
Fentanyl-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-28069:
Morphine-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-28077:
Oliceridine-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-28085:
SR17018-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-28086:
PZM21-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-28088:
DAMGO-bound mu-opioid receptor-Gi complex
Method: single particle / : Zhuang Y, Wang Y, Guo S, Zhou XE, Rao Q, He X, He B, Liu J, Zhou Q, Wang X, Liu W, Jiang X, Yang D, Chen X, Jiang Y, Jiang H, Shen J, Melcher K, Wang M, Xie X, Xu HE

EMDB-26103:
Cryo-EM structure of corticotropin releasing factor receptor 2 bound to Urocortin 1 and coupled with heterotrimeric G11 protein
Method: single particle / : Zhao LH, Lin J, Mao C, Zhou XE, Ji S, Shen D, Xiao P, Melcher K, Zhang Y, Yu X, Xu HE

EMDB-26104:
Cryo-EM structure of corticotropin releasing factor receptor 2 bound to Urocortin 1 and coupled with heterotrimeric Go protein
Method: single particle / : Zhao LH, Lin J, Mao C, Zhou XE, Ji S, Shen D, Xiao P, Melcher K, Zhang Y, Yu X, Xu HE

EMDB-27730:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-27731:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv1:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv2:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-23708:
ATP-bound AMP-activated protein kinase
Method: single particle / : Yan Y, Mukherjee S, Harikumar KG, Strutzenberg T, Zhou XE, Powell SK, Xu T, Sheldon R, Lamp J, Brunzelle JS, Radziwon K, Ellis A, Novick SJ, Vega IE, Jones R, Miller LJ, Xu HE, Griffin PR, Kossiakoff AA, Melcher K

EMDB-24607:
SARS-CoV-2 spike in complex with the S2X58 neutralizing antibody Fab fragment (two receptor-binding domains open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-24608:
SARS-CoV-2 spike in complex with the S2X58 neutralizing antibody Fab fragment (three receptor-binding domains open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-24347:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24365:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ra8:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ral:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-22336:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and Fab-nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

EMDB-22337:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Fab and nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

EMDB-24299:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24300:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Veesler D

EMDB-24301:
SARS-CoV-2 spike glycoprotein ectodomain in complex with the S2H97 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Veesler D

PDB-7r7n:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-30974:
Serotonin 1D (5-HT1D) receptor-Gi protein complex
Method: single particle / : Xu P, Huang S, Zhang H, Mao C, Zhou XE, Shen DD, Jiang Y, Zhang Y, Xu HE

EMDB-30971:
Apo serotonin 1A (5-HT1A) receptor-Gi protein complex
Method: single particle / : Xu P, Huang S, Zhang H, Mao C, Zhou XE, Shen DD, Jiang Y, Zhang Y, Xu HE

EMDB-30972:
Serotonin-bound Serotonin 1A (5-HT1A) receptor-Gi protein complex
Method: single particle / : Xu P, Huang S, Zhang H, Mao C, Zhou XE, Shen DD, Jiang Y, Zhang Y, Xu HE

EMDB-30973:
Aripiprazole-bound serotonin 1A (5-HT1A) receptor-Gi protein complex
Method: single particle / : Xu P, Huang S, Zhang H, Mao C, Zhou XE, Shen DD, Jiang Y, Zhang Y, Xu HE

EMDB-30975:
Serotonin 1E (5-HT1E) receptor-Gi protein complex
Method: single particle / : Xu P, Huang S, Zhang H, Mao C, Zhou XE, Shen DD, Jiang Y, Zhang Y, Xu HE

EMDB-30410:
Dopamine Receptor D3R-Gi-Pramipexole complex
Method: single particle / : Xu P, Huang S, Mao C, Krumm B, Zhou X, Tan Y, Huang XP, Liu Y, Shen DD, Jiang Y, Yu X, Jiang H, Melcher K, Roth B, Cheng X, Zhang Y, Xu H

EMDB-30411:
Dopamine Receptor D3R-Gi-PD128907 complex
Method: single particle / : Xu P, Huang S, Mao C, Krumm B, Zhou X, Tan Y, Huang XP, Liu Y, Shen DD, Jiang Y, Yu X, Jiang H, Melcher K, Roth B, Cheng X, Zhang Y, Xu H

EMDB-23390:
Allosteric modulator LY3154207 binding to SKF-81297-bound dopamine receptor 1 in complex with miniGs protein
Method: single particle / : Zhuang Y, Krumm B, Zhang H, Zhou XE, Wang Y, Guo J, Huang XP, Liu Y, Wang L, Cheng X, Jiang Y, Jiang H, Melcher K, Zhang C, Yi W, Roth BL, Zhang Y, Xu HE

EMDB-23391:
Allosteric modulator LY3154207 binding to dopamine-bound dopamine receptor 1 in complex with miniGs protein
Method: single particle / : Zhuang Y, Krumm B, Zhang H, Zhou XE, Wang Y, Guo J, Huang XP, Liu Y, Wang L, Cheng X, Jiang Y, Jiang H, Melcher K, Zhang C, Yi W, Roth BL, Zhang Y, Xu HE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more